Validate Table 1 Reconciliation against Published Baseline — validate_table1_reconciliation • omopduckdb

Reconciles prospective OMOP-derived Table 1 distributions and counts against an existing source Table 1.

Usage

validate_table1_reconciliation(
  omop_table1,
  source_table1,
  tolerance = 0.05,
  count_tolerance = 0.01
)

Arguments

omop_table1: Prospective Table 1 (data.frame, list from generate_table1, or CSV path).
source_table1: Baseline Table 1 (data.frame, list, or CSV path).
tolerance: Relative drift threshold for feature distributions (default 0.05 = 5%).
count_tolerance: Relative discrepancy threshold for patient counts (default 0.01 = 1%).

Value

A list with reconciliation status, concordance summary, feature comparison data.frame, and missing features.