Generate Table 1 and Completeness Matrix — generate

Generates standard epidemiological Table 1 descriptive statistics and Table 1b completeness audit.

Usage

generate_table1(
  data,
  strata_col = "outcome_flag",
  continuous_vars = NULL,
  categorical_vars = NULL,
  table_name = NULL,
  strata_labels = NULL,
  compute_smd = TRUE,
  compute_pvalues = TRUE,
  decimal_places = 1
)

Arguments

data: A data.frame or active DuckDB DBI connection.
strata_col: Column name defining stratification (default "outcome_flag").
continuous_vars: Character vector of continuous column names.
categorical_vars: Character vector of categorical column names.
table_name: Character string of table name if data is a DuckDB connection.
strata_labels: Named list mapping strata values to display names.
compute_smd: Logical. Compute Standardized Mean Differences between strata (default TRUE).
compute_pvalues: Logical. Compute p-values between strata (default TRUE).
decimal_places: Integer decimal places for numeric outputs (default 1).

Value

A list containing:

table1: Formatted Table 1 descriptive statistics.
table1b: Table 1b completeness / missingness matrix.