Bundles consortium study outputs into publication-ready Quarto (.qmd) or Typst (.typ) documents formatted according to target medical journal guidelines (JAMA, Lancet, JAMIA) with automated cross-referencing and an itemized TRIPOD checklist appendix.
Usage
build_manuscript_scaffold(
title = "Multicenter Federated Health Study",
study_title = NULL,
authors = NULL,
consortium_name = "Federated Health Data Consortium",
journal = "JAMA",
target_journal = NULL,
format = "quarto",
abstract = NULL,
tables = NULL,
table1 = NULL,
table2 = NULL,
multivariable_table = NULL,
iecv = NULL,
diagnostics = NULL,
explainability = NULL,
calibration = NULL,
dca = NULL,
output_dir = NULL,
output_file = NULL
)Arguments
- title
Title of the manuscript.
- study_title
Optional alias for title.
Vector or list of author names.
- consortium_name
Name of the research network.
- journal
Target journal style:
"JAMA","Lancet","JAMIA", or"Generic".- target_journal
Optional alias for journal.
- format
Target format:
"quarto"or"typst".- abstract
Structured abstract list or plain text string.
- tables
Optional named list of study tables.
- table1
Table 1 baseline characteristics data frame or object.
- table2
Table 2 participant flow / attrition data frame or object.
- multivariable_table
Table 5 risk factors data frame or object.
- iecv
Cross-site validation IECV matrix object.
- diagnostics
Cohort diagnostics object.
- explainability
Explainability summary object.
- calibration
Calibration result object.
- dca
Decision curve analysis object.
- output_dir
Optional directory to write manuscript file.
- output_file
Optional explicit file path.